# Multimodal Mediation Analysis

## Documentation for package ‘multimedia’ version 0.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

ansi_aware_handler | Pretty Printing
bind_mediation | Convert 'mediation_data' to a single data.frame
bootstrap | Bootstrap Distribution for Estimators
brms_model | Bayesian Regression Model across Responses
brms_sampler | Sample from a Bayesian Regression Model
contrast_predictions | Estimate the Difference between Profiles
contrast_samples | Difference between Samples at Contrasting Profiles
demo_joy | A Demo Dataset (Random)
demo_spline | A Demo Dataset (Spline)
direct_effect | Direct Effects from Estimated Model
edges | Graphical Structure for Mediation Objects
edges-method | Access Mediation Model DAG
effect_summary | Average Effects across j
estimate | Estimate a Mediation Model
estimator | Accessor for Model Estimators
estimator-method | Accessor for Estimators
exper_df | Convert a Summarized Experiment to a data.frame
fdr_summary | Calibration using Synthetic Nulls
glmnet_model | Regularized 'Glmnet' Model across Responses
glmnet_sampler | Sample from a 'Glmnet' Package Model
indirect_overall | Overall Indirect Effect
indirect_pathwise | Indirect Effects via Single Mediation Paths
lm_model | Linear Model across Responses
lm_sampler | Sample a Linear Model
lnm_model | Logistic Normal Multinomial Model
lnm_sampler | Sample from the Logistic Normal Multinomial
mediation_data | 'mediation_data' Constructor
mediation_models | Accessor for Outcome Models
mediators | Access Class-Specific Mediators
mediators-method | Access to @mediators in Mediation Data
mediators-method | Names of Mediators in a Multimedia Object
mediators<- | Set Mediators
mediators<--method | Set the Mediators in a Mediation Data Object
mindfulness | Mindfulness Dataset
model-class | Representation of an Outcome or Mediation Model
multimedia | 'multimedia' Constructor
nrow-method | How many samples in the mediation dataset?
nullify | Nullify Active Edges
null_contrast | Compare Effects from Experimental vs. Null Mediation Data
n_mediators | Number of Mediators in a Multimedia Object
n_outcomes | Number of Outcomes in a Multimedia Object
outcomes | Access Outcomes
outcomes-method | Outcomes Data in a Mediation Data Object
outcomes-method | Names of Outcomes in a Multimedia Object
outcomes<- | Set Outcomes This is an setter method for outcomes in an S4 object, usually of class mediation_data.
outcomes<--method | Set the Outcomes in a Mediation Data Object
outcome_model | Access the Outcome Model in a Multimedia Object
outcome_models | Accessor for Outcome Models
parallelize | Parallelize Estimation across Responses
plot_mediators | Visualize Indirect Effects
plot_sensitivity | Generic Sensitivity Plot
predict-method | Predictions from a Multimedia Class
predict_across | Predict a Subset of Responses
pretreatments | Access Pretreatments
pretreatments-method | Pretreatments in a Mediation Data Object
pretreatments<- | Set Pretreatments This is an setter method for pretreatments in an S4 object, usually of class mediation_data.
pretreatments<--method | Set the Pretreatments in a Mediation Data Object
retrieve_names | Variables in a Multimedia Object
rf_model | Random Forest Model
rf_sampler | Sample from a Random Forest Model
sample-method | Sample New Mediator/Outcome Data
sensitivity | Sensitivity Analysis for Overall Indirect Effect
sensitivity_pathwise | Sensitivity Analysis for Pathwise Indirect Effects
sensitivity_perturb | Sensitivity to User-Specified Perturbations
setup_profile | Define a 'treatment_profile' object
spline_fun | Generate Random Spline
sub_formula | Helper to Modify Formulas
treatments | Access Treatments
treatments-method | Treatments in a Mediation Data Object
treatments-method | Names of Treatments in a Multimedia Object
treatments<- | Set Treatments This is an setter method for treatments in an S4 object, usually of class mediation_data.
treatments<--method | Set the Treatments in a Mediation Data Object
treatment_profile-class | Define a Treatment Profile
[-method | Subset a mediation dataset