# Changepoint Additive Models for Time Series Omics Data

## Documentation for package ‘cpam’ version 0.2.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

acat | Aggregated Cauchy Association Test
compute_p_values | Compute p-values for each target ID
cpam | The cpam class
cpam-class | The cpam class
estimate_changepoint | Use model selection to estimate changepoints
lancaster | Lancaster's method for p-value aggregation
plot_cluster | Plot clustered targets
plot_cpam | Plot fitted changepoint additive models
prepare_cpam | Prepare a cpam object
results | Create a results table from a cpam object
select_shape | Use model selection to select a shape for each target
ts_filter | Removes lowly expressed genes
visualise | Launches a Shiny app to visualise the data and fitted models of a cpam object
visualize | Launches a Shiny app to visualise the data and fitted models of a cpam object